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Updates for Numpy, StickyDesign compatibility#3

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cgevans wants to merge 4 commits intoDNA-and-Natural-Algorithms-Group:masterfrom
cgevans:master
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Updates for Numpy, StickyDesign compatibility#3
cgevans wants to merge 4 commits intoDNA-and-Natural-Algorithms-Group:masterfrom
cgevans:master

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@cgevans cgevans commented Dec 11, 2023

These changes allow Piperine to work with more recent versions of Python (eg, 3.12) and Numpy (eg, 1.26). They also change the dependency requirements to use StickyDesign ≥ 0.8.4, which fixes a build problem for _stickyext with more recent Numpy versions, and automatically use the fast=False pure-Python method in both Piperine energetics modules if _stickyext was still not built successfully.

I'm currently waiting on confirmation that this works for other people.

- stickydesign 0.9.0.a2 is now compatible (reimplements fastsub in rust).
- peppercompiler 0.1.4 (not yet released) fixes several file name problems
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This is now working for me (Linux), and other people (Mac). The changes here need a new minor release of peppercompiler, however.

@cgevans cgevans marked this pull request as ready for review December 13, 2023 19:28
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